GgaEX6009974 @ galGal4
Exon Skipping
Gene
ENSGALG00000004476 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr12:3121772-3122472:-
Coord C1 exon
chr12:3122353-3122472
Coord A exon
chr12:3121990-3122086
Coord C2 exon
chr12:3121772-3121888
Length
97 bp
Sequences
Splice sites
3' ss Seq
ATGGTCCCACCTTCCCTCAGACC
3' ss Score
9.38
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
ACCGACTGTGCCAACTACGTCCGCCTGCTGCAGCCCTACAACAGAACACACCTGCTGGCCTGCGGGACGGGTGCCTGCCACCCCGTCTGCACCTTCATCTACGTGGGGCACCGCGGTGAG
Seq A exon
ACCCAGCATGCCTTCAGCTTGGACCCTGGTAGCACGGAGAGTGGTCGTGGCAGGTGCCCACATGAGCCTGACCGTGCATTTGCCAGCACCATCATCG
Seq C2 exon
GTGGGGAGCTCTATGCTGGCCTCACTGCGGACTTCCTCGGCCGTGATCCCGGCATCTTCCGCAGCACCGGGACCCGCGCCGCGCTGCGCACTGAGGTGGACCAGCGCCTGCTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476-'2-8,'2-5,3-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.515 C2=0.025
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.7=100)
A:
PF0140314=Sema=FE(7.2=100)
C2:
PF0140314=Sema=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTGCCAACTACGTCCG
R:
GGAAGATGCCGGGATCACG
Band lengths:
177-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]