BtaEX6094909 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49075037-49078826:-
Coord C1 exon
chr22:49078647-49078826
Coord A exon
chr22:49075819-49075959
Coord C2 exon
chr22:49075037-49075200
Length
141 bp
Sequences
Splice sites
3' ss Seq
TACCTGTGTTATCTTCCCAGATG
3' ss Score
9.79
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTGCTGTTTCAGGAGGACCTGGAGATCACACATATGTACTCGGCAGAGGGTGAGGAGGTGCAGCTGTCCTTCTCCATCTACCCGTCCAGCAACGTGGAGGACTGGCTGCGGGAGGTGGAAAACAGCATGAAGGCCAGCGTGCGGGACATCATCGAGAGGGCCATCAAGGCCTACCCCAGG
Seq A exon
ATGCTCAGGACTCAGTGGGTTCTGAACTGGCCTGGCCAGGTGACCATCGCCGGGTGTCAGACCTATTGGACCTTAGAGGTGGAAGAGGCTCTGGAGGCTGGCAACCTCAGCAGCCGGCTGTTCCCCCAGCTTGCCCGGCAG
Seq C2 exon
CTCAGTGACCTGGTGGCACTGGTGCGGGGAAGTCTGTCCCGCATGCAGCGAGCTGTGCTGTCGGCGCTAATCGTCATCGAGGTCCACGCCAAGGATGTGGTGCACAAGCTGGTCCAGGAGAACGTGGTCAGCGTGCATGACTTCGAGTGGATCTCACAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794-'25-28,'25-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(14.1=96.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCTGTCCTTCTCCATC
R:
GTTCTCCTGGACCAGCTTGTG
Band lengths:
246-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]