HsaEX6056399 @ hg38
Exon Skipping
Gene
ENSG00000114841 | DNAH1
Description
dynein axonemal heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr3:52358558-52360079:+
Coord C1 exon
chr3:52358558-52358737
Coord A exon
chr3:52359246-52359386
Coord C2 exon
chr3:52359916-52360079
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGCCCATGCTGTCTTCCCAGATG
3' ss Score
9.57
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
CTGCTATTCCAGGAGGACCTGGAGATCACGCACATGTACTCAGCCGAGGGGGAGGAGGTACAGTTGTGCTTCTCCATCTACCCCTCCAGCAACGTGGAGGACTGGCTGCGGGAGGTGGAGCGCAGCATGAAGGCCAGTGTGCACGACATCATTGAGAAGGCCATCAGGGCCTACCCCACG
Seq A exon
ATGCCCAGGACCCAGTGGGTTCTGAACTGGCCTGGCCAGGTGACCATCGCTGGGTGCCAGACCTACTGGACCATGGAGGTGGCAGAGGCTCTGGAGGCCGGCAACCTCAGAAGCCAACTGTTCCCCCAGCTCTGCCAGCAG
Seq C2 exon
CTCAGTGATCTGGTGGCCCTTGTGCGGGGGAAGCTGTCCCGCATGCAGCGGGCAGTGCTGTCAGCGCTAATCGTCATTGAGGTCCATGCCAAGGACGTGGTGAGCAAGCTAATCCAGGAGAACGTGGTCAGCGTGAATGACTTCCAGTGGATCTCACAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(14.1=96.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATCTACCCCTCCAGCAA
R:
ATTCACGCTGACCACGTTCTC
Band lengths:
247-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains