DreEX6092634 @ danRer10
Exon Skipping
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34435697-34438141:-
Coord C1 exon
chr11:34437962-34438141
Coord A exon
chr11:34435988-34436128
Coord C2 exon
chr11:34435697-34435860
Length
141 bp
Sequences
Splice sites
3' ss Seq
AATCATAATTATTTTGGCAGCAT
3' ss Score
2.68
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTCCACTTTCAGTCAGATCTACTGATCACACGCATGTACTCTTCTGAGGGAGAGGAAGTTCATTTATCCGTTCCTGTCTCTCCTACTGGCAATGTGGAGCACTGGTTACGGGAAGTGGAGAATTCAATGAAAGCCAGTGTAAGAGACAACATCAGTCGCTCTTTGCAGGCTTATGTTGAG
Seq A exon
CATCCTCGCACAGAGTGGGTTCTGTCCTGGCCCGGTCAGGTTGTTATTGCTGGCTGTCAAACATTTTGGACCCAAGAAGTGTCAGAGTCTTTGAATAAGGGAGACTTGGCAGATCGGCTTTACCCACAGTTGCAGAAACAG
Seq C2 exon
TTAGGAGATTTGGTGAAGCTGGTGCGGGGTCAGCTGTCAAAGATGCAACGGGCCATACTCTCAGCACTCATTGTCATTGAAGTACATGCTAAAGATGTGGCAGCCAAGCTGGTTGAGGAGGAAGTGTCCAGTGTCAATGACTTTGAGTGGATCAGCCAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115-'28-28,'28-26,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(14.4=96.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACTGGTTACGGGAAGTG
R:
GCTGGCTGATCCACTCAAAGT
Band lengths:
244-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]