HsaEX6056399 @ hg19
Exon Skipping
Gene
ENSG00000114841 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:2940]
Coordinates
chr3:52392574-52394095:+
Coord C1 exon
chr3:52392574-52392753
Coord A exon
chr3:52393262-52393402
Coord C2 exon
chr3:52393932-52394095
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGCCCATGCTGTCTTCCCAGATG
3' ss Score
9.57
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
CTGCTATTCCAGGAGGACCTGGAGATCACGCACATGTACTCAGCCGAGGGGGAGGAGGTACAGTTGTGCTTCTCCATCTACCCCTCCAGCAACGTGGAGGACTGGCTGCGGGAGGTGGAGCGCAGCATGAAGGCCAGTGTGCACGACATCATTGAGAAGGCCATCAGGGCCTACCCCACG
Seq A exon
ATGCCCAGGACCCAGTGGGTTCTGAACTGGCCTGGCCAGGTGACCATCGCTGGGTGCCAGACCTACTGGACCATGGAGGTGGCAGAGGCTCTGGAGGCCGGCAACCTCAGAAGCCAACTGTTCCCCCAGCTCTGCCAGCAG
Seq C2 exon
CTCAGTGATCTGGTGGCCCTTGTGCGGGGGAAGCTGTCCCGCATGCAGCGGGCAGTGCTGTCAGCGCTAATCGTCATTGAGGTCCATGCCAAGGACGTGGTGAGCAAGCTAATCCAGGAGAACGTGGTCAGCGTGAATGACTTCCAGTGGATCTCACAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(14.1=96.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATCTACCCCTCCAGCAA
R:
ATTCACGCTGACCACGTTCTC
Band lengths:
247-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)