GgaEX6009952 @ galGal3
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2888055-2889935:+
Coord C1 exon
chr12:2888055-2888234
Coord A exon
chr12:2888736-2888876
Coord C2 exon
chr12:2889772-2889935
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCCTTGTTTTTAAGACC
3' ss Score
8.36
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTACAGTTCCAGGAGGATCTGCAGATCACACACATGTATTCTTCTGAAGGAGAAGAGGTGAAGCTGTCTGCTGCCATTTATCCCACTGACGAGGTGGAGGACTGGCTGCTGGAAGTTGAGAAATCCATGAAGGCCAGCGTACGGGACAACATAGAAAGATCAGTTGGTGTCTACCCAGAG
Seq A exon
ACCCCTCGTACTACGTGGGTCTTGCAATGGCCTGGCCAGGTGACCATTGTTGGCTGTCAGATTTTCTGGACAAAGGAGGTGTCTGAAGCTCTGGAATCAGGAGATTTGGCCAGCAGGCTTTTCCCACAGCTGAGTACTCAG
Seq C2 exon
CTGGCTGATTTGGTTGCTGTGGTCCGTGGCCAACTGTCTAAGATGCAACGAGCAGTGATGTCAGCTCTCATTGTGATTGAGGTCCATGCCAAGGATGTTGCAGCAAAGCTGATAGAGGAGAATGTGACGAGCGTGAATGATTTCGAGTGGATCTCCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'25-28,'25-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(14.1=96.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGCTGCTGGAAGTTGAG
R:
AGCTGGGAGATCCACTCGAAA
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]