RnoEX0028402 @ rn6
Exon Skipping
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7379180-7380256:-
Coord C1 exon
chr16:7380077-7380256
Coord A exon
chr16:7379818-7379958
Coord C2 exon
chr16:7379180-7379343
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGCTCATGTTGTCTTTCCAGATG
3' ss Score
10.81
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
CTGCTGTTCCAGGAGGATTTGGAGATCACACACATGTATTCGGCAGAGGGGGAAGAGGTGAAGCTGTCCTTCTCCATCTACCCCTCCAGCAATGTGGAGGACTGGCTGCTGGAGGTGGAGCGTAGCATGAAGGCCAGTGTGCACGACATCATCGAGATGGCCATCAAGGCCTACCCTACA
Seq A exon
ATGCTCAGAACTGAGTGGGTTCTGAGCTGGCCGGGCCAGGTGACCATTGCTGGTTGCCAGACATACTGGACATTGGAGGTAGCCCAGGCACTTGAGGCCAGCAGCATCAGTAGCAGCCTCTTCCCCCAGCTCTCCAAACAG
Seq C2 exon
CTCAGTGACCTGGTGGCCCTCGTGCGGGGGAAGTTGTCCCGCATGCAGCGGATGGTGCTGTCGGCACTCATCGTCATCGAGGTCCACGCCAAGGACGTGGTGAGCAAGCTGATTGACGAGAACGTGGTCAGCGTACATGACTTTGAGTGGATCTCACAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(14.1=96.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATCTACCCCTCCAGCAA
R:
GTCATGTACGCTGACCACGTT
Band lengths:
250-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]