BtaEX6095180 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010138 | SEMA3B
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr22:50659780-50660404:-
Coord C1 exon
chr22:50660285-50660404
Coord A exon
chr22:50660105-50660198
Coord C2 exon
chr22:50659780-50659899
Length
94 bp
Sequences
Splice sites
3' ss Seq
AACTCCCTGCTGCCTCTCAGGAG
3' ss Score
5.67
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACCGAGTGCATGAACTTCGTGAAGTTGCTCCATGCCTACAACCATACCCACTTGCTGGCCTGTGGCACAGGGGCCTTCCACCCAATCTGTGCGTTTGTGGAGGTGGGCCAGCGGCTGGAG
Seq A exon
GAGCCCATGCTCCGGCTGGACCCTCGAAGGCTGGAGGATGGCAAGGGCAAGAGTCCTTATGACCCCAGGCATCGGGCTGCCTCCGTGCTGGTGG
Seq C2 exon
GGGAAGAACTGTACTCGGGGGTAGCTGCGGACCTCATGGGCCGGGACTTCACCATCTTCCGCAGCCTGGGCCAGCGTCCAAGTCTCCGGACAGAGCCGCACGACTCCCGCTGGCTCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010138-'7-12,'7-9,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.406 C2=0.159
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(21.9=100)
A:
PF0140314=Sema=FE(17.4=100)
C2:
PF0140314=Sema=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTGCATGAACTTCGTGA
R:
CTGCGGAAGATGGTGAAGTCC
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]