GgaEX7007736 @ galGal4
Exon Skipping
Gene
ENSGALG00000013722 | SEMA3B
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr12:3222619-3223107:+
Coord C1 exon
chr12:3222619-3222720
Coord A exon
chr12:3222809-3222902
Coord C2 exon
chr12:3222988-3223107
Length
94 bp
Sequences
Splice sites
3' ss Seq
CACTGACCCCACTCTCCCAGGAC
3' ss Score
5.85
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
GCCGACTGCATGAACTTCGTGAAGATCCTGCACGCCTACAACCGGACCCACCTGTACGCCTGCGGCACCGGCGCCTTCCACCCCACCTGCGCCTTCGTGGAG
Seq A exon
GACCACGTCTTCAAGCTGGATGCGCGGCGCGCTGAGGATGGCAAAGGGAAGAGCCCCTACGACCCCCGGCACGCGGCCGCCTCCGTTCTCGTGG
Seq C2 exon
GCGAGGAGCTCTACTCGGGGGTGGCCACCGATCTGATGGGGCGCGACTTCACCATCTTCCGCAGCATGGGCTCCCGCCCGTCCGTCCGCACGGAGCAGCACGACTCCCGCTGGCTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013722-'5-5,'5-4,8-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.156 C2=0.098
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.6=100)
A:
PF0140314=Sema=FE(7.1=100)
C2:
PF0140314=Sema=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACTGCATGAACTTCGTGA
R:
ATGCTGCGGAAGATGGTGAAG
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]