DreEX6050297 @ danRer10
Exon Skipping
Gene
ENSDARG00000011672 | sema3b
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:ZFIN;Acc:ZDB-GENE-081105-78]
Coordinates
chr8:26575958-26576599:-
Coord C1 exon
chr8:26576480-26576599
Coord A exon
chr8:26576276-26576369
Coord C2 exon
chr8:26575958-26576077
Length
94 bp
Sequences
Splice sites
3' ss Seq
AGTTTGCTTTTGCTCCACAGGAT
3' ss Score
8.85
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ACGGATTGCGTAAACTATGTGAAAGTGCTACACCACTATAATCGAACTCACCTATACGCCTGTGGTACGGGGGCTTTCCACCCCACCTGTGCTTATGTGGAGGTGGGACAGAAAATGGAG
Seq A exon
GATCATGTATTTAGAATCGATCCCTCTCTTGTAGAAGATGGAAAAGGGAAGAGTCCATATGACCCACGTCACACATCAGCTTCTGTTCTGATTG
Seq C2 exon
GTGATGAGCTTTATGCAGGTGTGGCCACTGATTTGATGGGACGCGACTTTACAATCTTTCGCAGTATGGGACAAAAACCCTCCATACGGACTGAACAGCACGATTCTCGGTGGCTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011672-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.219 C2=0.098
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.8=100)
A:
PF0140314=Sema=FE(7.0=100)
C2:
PF0140314=Sema=FE(9.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTATACGCCTGTGGTACGG
R:
GAATCGTGCTGTTCAGTCCGT
Band lengths:
177-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]