HsaEX1036446 @ hg38
Exon Skipping
Gene
ENSG00000012171 | SEMA3B
Description
semaphorin 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr3:50270890-50271458:+
Coord C1 exon
chr3:50270890-50271009
Coord A exon
chr3:50271088-50271181
Coord C2 exon
chr3:50271361-50271458
Length
94 bp
Sequences
Splice sites
3' ss Seq
CAACTTGCCACACCTCCCAGGAG
3' ss Score
4.96
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACTGAGTGCATGAACTTCGTGAAGTTGCTGCATGCCTACAACCGCACCCATTTGCTGGCCTGTGGCACGGGAGCCTTCCACCCAACCTGTGCCTTTGTGGAAGTGGGCCACCGGGCAGAG
Seq A exon
GAGCCCGTCCTCCGGCTGGACCCAGGAAGGATAGAGGATGGCAAGGGGAAGAGTCCTTATGACCCCAGGCATCGGGCTGCCTCCGTGCTGGTGG
Seq C2 exon
GGGAGGAGCTATACTCAGGGGTGGCAGCAGACCTCATGGGACGAGACTTTACCATCTTTCGCAGCCTAGGGCAACGTCCAAGTCTCCGAACAGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000012171-'17-17,'17-15,19-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.365 C2=0.110
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(24.4=100)
A:
PF0140314=Sema=FE(19.4=100)
C2:
PF0140314=Sema=FE(20.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAACCGCACCCATTTGCT
R:
TCTGTTCGGAGACTTGGACGT
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains