BtaEX6095701 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51869993-51870458:+
Coord C1 exon
chr22:51869993-51870028
Coord A exon
chr22:51870171-51870206
Coord C2 exon
chr22:51870387-51870458
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTCTTTTGCCCTCAGGGA
3' ss Score
12.28
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
GGCTCCCCAGGGTGGGCCGGCCCTCGTGGAGAACCA
Seq A exon
GGAGAGCGAGGACCTCGAGGCCCAAAGGGGGAGCCG
Seq C2 exon
GGAGAGCCTGGACAAGTCATTGGAGGCGAGGGCCCAGGGCTTCCTGGGCAGAAAGGGGACCCTGGACCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'32-36,'32-35,33-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.7=100)
A:
PF0139113=Collagen=FE(16.7=100)
C2:
PF0139113=Collagen=PD(16.7=45.8),PF0139113=Collagen=PU(27.4=70.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTCGTGGAGAACCA
R:
GAGGTCCAGGGTCCCCTTTC
Band lengths:
88-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]