GgaEX1016960 @ galGal4
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr12:9070963-9073579:+
Coord C1 exon
chr12:9070963-9071034
Coord A exon
chr12:9071417-9071470
Coord C2 exon
chr12:9073547-9073579
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCACTCTCATTCCTTTCCAGGGA
3' ss Score
11.04
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
GGCTTCCCTGGTGCTGATGGGCGGCCGGGGCTTCCTGGCCCCCCCGGGAACCCTGGGTCTCCTGGCCAGCCG
Seq A exon
GGACCACGGGGAACAACGGGGCATCCTGGCCCAAAGGGGGAAAAAGGCGAGCCG
Seq C2 exon
GCTCCCAGTGTGGCCACTGTCAGAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811_MULTIEX2-2/78=C1-15
Average complexity
C3
Mappability confidence:
97%=100=97%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(7.6=20.8)
A:
NO
C2:
PF0139113=Collagen=PD(7.6=45.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCCTGGTGCTGATGG
R:
TTCTCTCCTCTGACAGTGGCC
Band lengths:
103-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]