BtaEX6096638 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3670070-3673563:+
Coord C1 exon
chr23:3670070-3670199
Coord A exon
chr23:3672124-3672287
Coord C2 exon
chr23:3673401-3673563
Length
164 bp
Sequences
Splice sites
3' ss Seq
ATCAAGTTGTGTTTTAACAGGTA
3' ss Score
6.85
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ACCTTCATGGAAGAAATGACCAGAAAGCAGCCTGACGTGGACAAAGTCACCAAGACCTACAAGAGGAGGGCAGCAGACCCTTCCTCCTTGCAGTCCCACATCCCGGTCTTGGATAAGGGGCGAGCAGGAC
Seq A exon
GTAAACGCCTCCCAGCCCCAAGCTTCTATCCTTCTGGATCACAGACGCAAATTGAAACCAAAAATCCCAGGGTCAACTTACTGGTGAGCAAGTGGCAGCAAGTCTGGCTTCTCGCCTTAGAGAGGAGGCGGAAGCTGAACGACGCCTTGGACAGGCTGGAGGAG
Seq C2 exon
CTTAGAGAATTTGCCAACTTTGACTTTGATGTCTGGCGCAAGAAGTACATGCGCTGGATGAACCACAAGAAATCTCGAGTGATGGACTTTTTCAGGAGGATAGATAAAGATCAAGATGGGAAAATAACCCGACAAGAGTTTATTGACGGAATCCTTTCCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237-'111-104,'111-103,113-104=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.295 A=0.236 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(43.4=75.0)
A:
NO
C2:
PF134991=EF-hand_7=PU(54.8=72.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGACGTGGACAAAGTCACC
R:
CCGTCAATAAACTCTTGTCGGGT
Band lengths:
249-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]