GgaEX7003298 @ galGal4
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr3:86528976-86530550:+
Coord C1 exon
chr3:86528976-86529105
Coord A exon
chr3:86529924-86530087
Coord C2 exon
chr3:86530388-86530550
Length
164 bp
Sequences
Splice sites
3' ss Seq
ATTTTATTGTGTTTTAACAGGAA
3' ss Score
10.58
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
ACATTCATGGAGGAAATGACCAGAAAACAACCTGATGTTGATAAAGTTACAAAGACCTATAAAAGAAAGGCACTTGAACCTACTCCTGTACAATCTCATATTCCTGTCCTTGATAAGGGGAGAGCAGGAA
Seq A exon
GAAAGCGTTCCCCCACACCAGGCTTATATCCATCAGCAGCCCAGGCGCAAATTGAAACCAAGAATCCACGGGTAAACCTTTTAGTCAGCAAATGGCAGCAAGTCTGGCTTCTGGCCTTGGAAAGAAGAAGAAAACTCAATGATGCTTTGGACAGACTTGAAGAG
Seq C2 exon
CTGAGAGAATTTGCCAACTTTGATTTTGATATTTGGAGGAAAAAATATATGCGATGGATGAACCATAAGAAGTCTCGCGTAATGGACTTCTTCAGGAGGATTGATAAAGATCAGGATGGAAAAATAACAAGGCAGGAATTTATTGATGGAATTCTTTCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'117-126,'117-125,118-126=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=0.273 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(39.4=63.6)
A:
NO
C2:
PF134991=EF-hand_7=PU(55.4=74.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAAATGACCAGAAAACAACC
R:
CCTGCCTTGTTATTTTTCCATCCTG
Band lengths:
258-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]