RnoEX0030040 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:37916090-37918543:-
Coord C1 exon
chr9:37918414-37918543
Coord A exon
chr9:37917117-37917280
Coord C2 exon
chr9:37916090-37916252
Length
164 bp
Sequences
Splice sites
3' ss Seq
CTGGTGTTGTGTTTTAACAGGGA
3' ss Score
9.59
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
ACCTTCATGGAAGAAATGACCAGAAAACAGCCTGATGTTGATAAAGTTACCAAGACCTATAAGAGGAGGGCCGCTGACCCTCCATCCTTACAGTCTCACATCCCCGTCTTGGACAAGGGACGAGCCGGAA
Seq A exon
GGAAACGCTTCCCAGCCTCAGGCCTGTATCCTTCAGGGTCACAGACGCAAATCGAAACCAAGAACCCCAGGGCTAACTTGCTGGTGAGCAAGTGGCAGCAGGTTTGGCTCCTGGCCTTGGAACGAAGGAGGAAGCTCAACGACGCCTTGGACAGGCTGGAGGAG
Seq C2 exon
CTGAGGGAATTCGCTAACTTCGATTTTGATATCTGGCGGAAAAAATACATGAGGTGGATGAATCATAAGAAGTCGAGAGTGATGGATTTCTTCCGGAGAATCGATAAGGACCAGGATGGGAAGATCACTCGGCAGGAATTCATTGACGGCATTCTGTCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=0.218 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(44.2=77.3)
A:
NO
C2:
PF134991=EF-hand_7=PU(55.4=74.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAGAAAACAGCCTGATGT
R:
CTGCCGAGTGATCTTCCCATC
Band lengths:
249-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]