DreEX6059673 @ danRer10
Exon Skipping
Gene
ENSDARG00000101858 | FQ311894.1
Description
NA
Coordinates
chr13:1560454-1562960:+
Coord C1 exon
chr13:1560454-1560583
Coord A exon
chr13:1561718-1561884
Coord C2 exon
chr13:1562798-1562960
Length
167 bp
Sequences
Splice sites
3' ss Seq
CATTTGTTTTGTGTCATCAGGAA
3' ss Score
8.25
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ACTTTCTTGGAAGAGATGACCAGAAAACAACCAGATGTGGACAAAGTTACCAAAACTCATAAAAGAAAAGCCACAGCGGATCCACCGGTTCAGTCTCACATCCCTGTTCTAGATAAAGGACGAACACCTC
Seq A exon
GAAAGAGATCCCCGACCCAAACCATGTACACGGCGGCAGCATCGCAGGCACAAATCGAGACCAAGAACCCCCGAGTGAACCTGCTGGTTAGTAAATGGCAGCAGGTTTGGTTGCTGGCTCTGGACAGGAGGAGAAAACTCAATGACGCTCTCGACAGGCTAGAGGAG
Seq C2 exon
CTGAAAGAGTTTGCCAACTTTGACTTTGACGTATGGAGGAAGCGCTACATGCGCTGGATGAACCACAAGAAATCCCGAGTCATGGATTTCTTCCGGCGGATTGATAAAGACCAGGACGGCAAAGTCACGAGGCAGGAATTCATCGATGGCATCCTGTCCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101858-'55-58,'55-57,57-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.864 A=0.304 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(41.5=77.3)
A:
PF134991=EF-hand_7=PU(0.1=0.0)
C2:
PF134991=EF-hand_7=FE(61.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAGAAAACAACCAGATGTG
R:
ATTCCTGCCTCGTGACTTTGC
Band lengths:
253-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]