BtaEX6096908 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016827 | RGL2
Description
Bos taurus ral guanine nucleotide dissociation stimulator-like 2 (RGL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075154]
Coordinates
chr23:7410359-7411222:-
Coord C1 exon
chr23:7411154-7411222
Coord A exon
chr23:7410917-7410991
Coord C2 exon
chr23:7410359-7410391
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCTCTGACTTCTGACCTCAGGGT
3' ss Score
7.92
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GAGGTGAAGCTGCAGCCCTCTCTGGAGCCAAATTCCAAGAAGTCCCCGAGGTCTGCCTCCCGGGGTGGG
Seq A exon
GGTGTGGTCCCATACCTTGGCACCTTCTTAAAAGACCTCGTAATGTTGGACGCAGCCTCTAAGGATGAGCTGGAG
Seq C2 exon
AATGGATACATCAATTTTGACAAGCGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016827-'13-17,'13-16,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.609 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(9.9=100)
A:
PF0061714=RasGEF=FE(10.8=100)
C2:
PF0061714=RasGEF=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCTGCAGCCCTCTCT
R:
TCCTCCGCTTGTCAAAATTGA
Band lengths:
96-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]