MmuEX6076927 @ mm10
Exon Skipping
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:33933712-33935007:+
Coord C1 exon
chr17:33933712-33933780
Coord A exon
chr17:33933897-33933971
Coord C2 exon
chr17:33934975-33935007
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTGCCATCTCTGCCTGCAGGGT
3' ss Score
10.67
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GAAGTGAAGCCGCAGCCCCCTGTGGAGCCACACTCCAAGAAGGCCCCAAGGTCTGGCTTCAGGGGTGGG
Seq A exon
GGTGTGGTTCCCTACCTGGGAACCTTCCTGAAGGACCTCGTGATGCTGGATGCGGCCTCCAAGGATGAGCTGGAG
Seq C2 exon
AATGGCTACATCAATTTTGACAAGCGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354-'28-26,'28-24,30-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.739 A=0.033 C2=0.087
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(9.9=100)
A:
PF0061714=RasGEF=FE(10.8=100)
C2:
PF0061714=RasGEF=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGAAGCCGCAGCCC
R:
TCCTCCGCTTGTCAAAATTGA
Band lengths:
100-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types