HsaEX0053310 @ hg38
Exon Skipping
Gene
ENSG00000237441 | RGL2
Description
ral guanine nucleotide dissociation stimulator like 2 [Source:HGNC Symbol;Acc:HGNC:9769]
Coordinates
chr6:33294034-33295045:-
Coord C1 exon
chr6:33294977-33295045
Coord A exon
chr6:33294688-33294762
Coord C2 exon
chr6:33294034-33294066
Length
75 bp
Sequences
Splice sites
3' ss Seq
ACCCTGACCCCTGACTTCAGGGT
3' ss Score
6.82
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GAGGTGAAGCTGCAGTCTCCTCTGGAGCCACACTCCAAGAAGGCCCCGAGGTCTGGCTCCCGGGGTGGG
Seq A exon
GGTGTGGTCCCATACCTTGGCACCTTCCTGAAGGACCTTGTGATGCTGGATGCAGCCTCCAAGGATGAGTTGGAG
Seq C2 exon
AATGGATACATCAATTTTGACAAGCGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237441_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.609 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(9.9=100)
A:
PF0061714=RasGEF=FE(10.8=100)
C2:
PF0061714=RasGEF=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGCTGCAGTCTCCTCTG
R:
TCCTCCGCTTGTCAAAATTGA
Band lengths:
97-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development