RnoEX6061765 @ rn6
Exon Skipping
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5461076-5462449:-
Coord C1 exon
chr20:5462381-5462449
Coord A exon
chr20:5462198-5462272
Coord C2 exon
chr20:5461076-5461108
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATCCCGATCTCTGCCTGCAGGGT
3' ss Score
9.81
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GAAGTAAAGCTGCAGCCCCCTGTGGAGCCACACTCCAAGAAGGCCCCAAGGTCTGGCTCCAGGGGTGGG
Seq A exon
GGTGTGGTTCCGTACCTGGGAACCTTCCTGAAGGATCTCGTGATGCTGGATGCAGCCTCCAAGGATGAGCTGGAG
Seq C2 exon
AATGGCTACATCAATTTTGACAAGCGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474-'19-21,'19-18,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.826 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(9.9=100)
A:
PF0061714=RasGEF=FE(10.8=100)
C2:
PF0061714=RasGEF=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTAAAGCTGCAGCCCCC
R:
TCCTCCGCTTGTCAAAATTGA
Band lengths:
100-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]