BtaEX6096971 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7749977-7752039:+
Coord C1 exon
chr23:7749977-7750149
Coord A exon
chr23:7751006-7751170
Coord C2 exon
chr23:7751847-7752039
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGCCCTGCACTTGCCCACAGCTG
3' ss Score
9.38
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GCGTGCTGGGCTCCCCGCTCATCTCACTGCTCTTCTGGATCCTCATCTGCTTCTCCATCGCGGCCCTGTTCACCAAGCGCTACAGCATCCGCCCCCTCATCGTGGCGCTCATCCTGCGTTCCATCTACTACCTGGGCATTGGGCCCACGCTCAACATCCTGGGTGCCCTCAAC
Seq A exon
CTGACCAACAAGATCGTGTTCGTGGTGAGCTTTGTGGGCAACCGTGGCACCTTCATCCGGGGCTATAAGGCCATGGTCATGGACATGGAGTTCCTGTACCACGTGGGCTACATCCTAACGAGTGTCTTGGGCCTCTTCGCCCACGAGCTCTTCTACAGCATCCTG
Seq C2 exon
CTCTTTGACCTCATCTACCGCGAAGAGACGCTGTTCAACGTCATCAAGAGCGTGACCCGCAACGGCCGCTCCATCCTGCTGACCGCCCTGCTGGCCCTCATCCTGGTCTACCTCTTCTCCATTGTCGGCTTCCTCTTCCTCAAGGACGACTTCATCCTTGAGGTGGACCGGCTGCCCAGCAACCACTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245-'59-58,'59-56,60-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(18.2=100)
A:
PF0052026=Ion_trans=FE(17.3=100)
C2:
PF0052026=Ion_trans=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCAAGCGCTACAGCATC
R:
GGAAGAGGAAGCCGACAATGG
Band lengths:
244-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]