MmuEX6076225 @ mm10
Exon Skipping
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27116609-27117925:+
Coord C1 exon
chr17:27116609-27116781
Coord A exon
chr17:27117166-27117330
Coord C2 exon
chr17:27117733-27117925
Length
165 bp
Sequences
Splice sites
3' ss Seq
GCCCTGCCCTTTCCACCCAGCTG
3' ss Score
8.37
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCGTGCTGGGCTCGCCGCTCATCTCGCTACTCTTCTGGATCCTCATCTGCTTCTCCATCGCTGCACTGTTCACCAAGCGCTACAGCGTCCGTCCCCTCATCGTGGCGCTGATCCTTCGGTCCATCTACTACCTGGGCATTGGGCCCACGCTCAACATCCTGGGTGCTCTCAAT
Seq A exon
CTGACCAACAAGATCGTGTTTGTGGTGAGCTTCGTGGGCAACCGTGGCACCTTCATCCGAGGCTATAAGGCCATGGTCATGGACATGGAGTTCCTGTACCATGTGGGCTACATCCTGACAAGCGTCCTGGGCCTCTTTGCCCATGAGCTCTTCTACAGCATCCTG
Seq C2 exon
CTCTTTGACCTCATCTACCGAGAGGAGACGCTGTTTAATGTCATCAAGAGTGTGACCCGCAATGGCCGCTCCATCCTACTGACCGCCCTGCTGGCCCTCATCCTTGTGTACCTCTTCTCCATCGTGGGCTTCCTCTTCCTCAAGGACGACTTCATCCTGGAGGTGGACCGGCTGCCCGGGAACCACTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-'76-82,'76-78,81-82=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(20.3=100)
A:
PF0052026=Ion_trans=FE(23.6=100)
C2:
PF0052026=Ion_trans=FE(27.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTCACCAAGCGCTACAG
R:
TCCTTGAGGAAGAGGAAGCCC
Band lengths:
255-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types