GgaEX0004090 @ galGal3
Exon Skipping
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4444472-4445658:-
Coord C1 exon
chr26:4445486-4445658
Coord A exon
chr26:4445205-4445369
Coord C2 exon
chr26:4444472-4444727
Length
165 bp
Sequences
Splice sites
3' ss Seq
CATTTCTGCTTGCTCTCCAGCTG
3' ss Score
8.57
5' ss Seq
CTGGTACAG
5' ss Score
3.91
Exon sequences
Seq C1 exon
GAGTGCTGGATTCCCCATTGATCTCACTGCTCTTCTGGATTCTGATCTGCTTCTCCATCATGGCCCTGTTCACCAAGCGGTACGGTGTCAGACCACTGCTGGTGGCCCTGATCTTGAGATCAATTTATTACTTGGGGATTGGACTCACACTGAACATCCTGGGAGCTCTCAAT
Seq A exon
CTGACCAACAAGATTGTGTTTGTGGTGAGCTTTGTGGGTAACCGTGGGACCTTCATCCGAGGCTACAAGGCCATGATCATGGACGTGGAGTTTCTTTACCACGTTGGCTACATCCTGACGAGCGTCCTGGGGCTCTTTGTGCATGAACTCTTCTACAGCATCCTG
Seq C2 exon
CTGTTTGACTTGATCTACCGTGAGGAGACCTTGTTTAATGTCATCAAGAGCGTGACGCGAAACGGGCGCTCCATCCTGCTGACTGCCCTCCTGGCGCTCATCCTTGTCTACCTCTTCTCCATTGTGGGCTTCTTGTTCCTGAAGGATGACTTCATCCTGGAGGTGGACCGGCTGCCGGACAGCAAAGCCCAAGGTAAGCCAAGCCATGGACTGCTGTCCTTGGTGCTTGGGCTGGAAGGGGACCAGCAGAGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'50-52,'50-51,51-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.4=1.7)
A:
PF0052026=Ion_trans=FE(23.2=100)
C2:
PF0052026=Ion_trans=FE(36.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATCATGGCCCTGTTCAC
R:
AGCCCACAATGGAGAAGAGGT
Band lengths:
251-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]