MmuEX6076225 @ mm9
Exon Skipping
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27253554-27254870:+
Coord C1 exon
chr17:27253554-27253726
Coord A exon
chr17:27254111-27254275
Coord C2 exon
chr17:27254678-27254870
Length
165 bp
Sequences
Splice sites
3' ss Seq
GCCCTGCCCTTTCCACCCAGCTG
3' ss Score
8.37
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCGTGCTGGGCTCGCCGCTCATCTCGCTACTCTTCTGGATCCTCATCTGCTTCTCCATCGCTGCACTGTTCACCAAGCGCTACAGCGTCCGTCCCCTCATCGTGGCGCTGATCCTTCGGTCCATCTACTACCTGGGCATTGGGCCCACGCTCAACATCCTGGGTGCTCTCAAT
Seq A exon
CTGACCAACAAGATCGTGTTTGTGGTGAGCTTCGTGGGCAACCGTGGCACCTTCATCCGAGGCTATAAGGCCATGGTCATGGACATGGAGTTCCTGTACCATGTGGGCTACATCCTGACAAGCGTCCTGGGCCTCTTTGCCCATGAGCTCTTCTACAGCATCCTG
Seq C2 exon
CTCTTTGACCTCATCTACCGAGAGGAGACGCTGTTTAATGTCATCAAGAGTGTGACCCGCAATGGCCGCTCCATCCTACTGACCGCCCTGCTGGCCCTCATCCTTGTGTACCTCTTCTCCATCGTGGGCTTCCTCTTCCTCAAGGACGACTTCATCCTGGAGGTGGACCGGCTGCCCGGGAACCACTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-'55-55,'55-54,56-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.4=1.7)
A:
PF0052026=Ion_trans=FE(23.6=100)
C2:
PF0052026=Ion_trans=FE(27.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTCACCAAGCGCTACAG
R:
TCCTTGAGGAAGAGGAAGCCC
Band lengths:
255-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: