RnoEX0045440 @ rn6
Exon Skipping
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5706425-5707731:+
Coord C1 exon
chr20:5706425-5706597
Coord A exon
chr20:5707011-5707175
Coord C2 exon
chr20:5707539-5707731
Length
165 bp
Sequences
Splice sites
3' ss Seq
CACCCGCCCTTTATACCTAGCTG
3' ss Score
6.32
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCGTGCTGGGCTCCCCACTCATCTCGCTCCTCTTCTGGATCCTCATCTGCTTCTCCATTGCCGCGCTGTTCACCAAGCACTACAGCGTCCGTCCCCTCATTGTGGCACTGGTCCTTCGCTCCATCTACTACCTGGGCATTGGGCCCACGCTCAACATCCTGGGTGCTCTCAAT
Seq A exon
CTGACCAACAAGATCGTGTTTGTGGTGAGCTTCGTGGGCAACCGCGGCACCTTCATCCGTGGCTATAAAGCAATGGTCATGGACATGGAGTTCCTGTATCACGTGGGCTACATCCTGACGAGTGTCCTGGGCCTCTTTGCTCATGAGCTCTTCTACAGTATCCTG
Seq C2 exon
CTCTTTGACCTCATCTACCGAGAGGAGACGCTGTTTAATGTCATCAAGAGCGTGACCCGCAATGGCCGCTCCATCCTGCTAACTGCCCTGCTGGCCCTCATCCTTGTCTACCTCTTCTCCATCGTGGGCTTCCTCTTCCTCAAGGATGACTTCATCCTGGAGGTGGACCGGCTGCCTGGGAACCACTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795-'60-70,'60-69,61-70
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.4=1.7)
A:
PF0052026=Ion_trans=FE(23.6=100)
C2:
PF0052026=Ion_trans=FE(27.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTGCTTCTCCATTGCCG
R:
AGGTAGACAAGGATGAGGGCC
Band lengths:
244-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]