DreEX0040360 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21303273-21305890:+
Coord C1 exon
chr8:21303273-21303445
Coord A exon
chr8:21303534-21303698
Coord C2 exon
chr8:21305701-21305890
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGTTGTCTTTTTTTATCCAGCTC
3' ss Score
8.49
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTAGCATCGACTCTTCTCTTCTGCTCATGGGATTCTGGTGTTTTGCTGGACTGGCTGTTTTAGGCCTGCTATTCAAGCGATATGGGTTTCAGTCACTGACCGTTGCCATCACGCTGCGCTGCATCTATCACTTCGGTATTGGTCCGACACTCCTCTTGCTGGGGGCTCTCAAT
Seq A exon
CTCATCAATAAGATAGTGTACTTGGTGAGCTTTGTGGGAAACAACGGCACCTTCATCATGGGTTATAAAGCCATGGTAATGGATGTAGAATTCCTGTATCATGTGGCTTACGTGTTAACCAGCAGTCTGGGGCTGTTTGTCCATGAGTTCTTCTACAGCATATTG
Seq C2 exon
CTGTTTGATCTGATCTACCGTGAGGAGACACTGTTTAACGTCATCAAGAGTGTGACCCGTAACGGCCGCTCTATTCTCCTCACTGCTGTCCTGGCCATCATTCTGGTCTACCTGTTCTCCATCGTCGGCTTTCTCTTCCTCAGGAATGACTTCATTATGGAAGTCGACCACCTTGCTAGCCCAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-'60-61,'60-60,61-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(3.5=13.8)
A:
PF0052026=Ion_trans=FE(23.9=100)
C2:
PF0052026=Ion_trans=FE(27.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTGCTGGACTGGCTGTT
R:
AGACCAGAATGATGGCCAGGA
Band lengths:
244-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]