BtaEX6096972 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7749048-7750149:+
Coord C1 exon
chr23:7749048-7749240
Coord A exon
chr23:7749463-7749588
Coord C2 exon
chr23:7749977-7750149
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCCACCCCCGCCTCTCCCAGGCA
3' ss Score
8.42
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATCGTGCGGCAGGACCGCAGCATGGAGCAGATCGTGTTCCCCGTGCCCGGCATCTGCCAGTTCCTGACGGAGGAGACCAAGCACCGTCTCTTCACCACCACCGAGCAGGATGAGCAGGGCAGCAAAGTGAGCGACTTCTTCGACCAGTCCTCCTTCCTGCACAACGAGATGGAGTGGCAGCGCAAGCTCCGCA
Seq A exon
GCATGCCACTCATCTACTGGTTCTCCCGCCGCATGACTCTCTGGGGCAGCATCTCCTTCAACCTGGCAGTCTTTATCAACATCATCATTGCCTTCTTCTACCCCTACGTGGAGGGCGCGTCCACAG
Seq C2 exon
GCGTGCTGGGCTCCCCGCTCATCTCACTGCTCTTCTGGATCCTCATCTGCTTCTCCATCGCGGCCCTGTTCACCAAGCGCTACAGCATCCGCCCCCTCATCGTGGCGCTCATCCTGCGTTCCATCTACTACCTGGGCATTGGGCCCACGCTCAACATCCTGGGTGCCCTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245-'57-55,'57-54,58-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(8.9=65.1)
C2:
PF0052026=Ion_trans=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAAGCACCGTCTCTTCAC
R:
CCCAGGTAGTAGATGGAACGC
Band lengths:
255-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]