HsaEX6046678 @ hg38
Exon Skipping
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr6:33688239-33689410:+
Coord C1 exon
chr6:33688239-33688431
Coord A exon
chr6:33688656-33688781
Coord C2 exon
chr6:33689238-33689410
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACCGTTGCCCTCCTCTTCAGGCA
3' ss Score
10.11
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATTGTGCGGCAGGACCGCAGCATGGAGCAGATCGTGTTCCCAGTGCCCGGCATCTGCCAGTTCCTGACGGAGGAAACCAAGCACCGGCTCTTCACCACTACTGAGCAGGACGAGCAGGGCAGCAAAGTGAGCGACTTCTTCGACCAGTCCTCCTTCCTGCACAACGAGATGGAGTGGCAGCGCAAGCTCCGCA
Seq A exon
GCATGCCGCTGATCTACTGGTTCTCCCGCCGCATGACCCTGTGGGGCAGCATCTCCTTCAACCTGGCCGTGTTTATCAACATCATCATTGCCTTCTTCTACCCTTACATGGAGGGCGCGTCCACAG
Seq C2 exon
GCGTGCTGGACTCCCCTCTCATCTCATTGCTCTTCTGGATCCTCATCTGCTTCTCCATCGCGGCCCTGTTCACCAAGCGCTACAGCATCCGCCCCCTCATCGTGGCGCTCATCCTGCGCTCCATCTACTATCTGGGCATCGGGCCCACACTCAACATCCTGGGTGCCCTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433-'105-113,'105-112,106-113=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.4=1.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGATCGTGTTCCCAGTG
R:
GATGCTGTAGCGCTTGGTGAA
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains