DreEX6049549 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21300763-21303445:+
Coord C1 exon
chr8:21300763-21300955
Coord A exon
chr8:21302853-21302975
Coord C2 exon
chr8:21303273-21303445
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTGTTGTGTTTTAGGCA
3' ss Score
11.61
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATTGTTCGTGAAGATCGCAGCATGGAGCAGATTGTGTTTCCTGTTCACCCTATCTGTGAGTTTCTTACGGAGGAGTCAAAGTTTCGAGTGTTCACCACCACGGAGCAGGACGAGCAGGGCAGCAAAGTCACAAACTTCTTCGAGCAGACCTCCTTCCTCCACAACGAGATGGAATGGCAGAAAAAGCTTCGCA
Seq A exon
GCATGCCGGTGCTGTACTGGTTCTCTCGCAGAATGTCTCTCTGGGGCACCATATCTTTCAACCTGGCTGTTTTCATCAATCTTATCATCGCTTTGTTTTACCCTCATGACTCTGGTCATTCTG
Seq C2 exon
GTAGCATCGACTCTTCTCTTCTGCTCATGGGATTCTGGTGTTTTGCTGGACTGGCTGTTTTAGGCCTGCTATTCAAGCGATATGGGTTTCAGTCACTGACCGTTGCCATCACGCTGCGCTGCATCTATCACTTCGGTATTGGTCCGACACTCCTCTTGCTGGGGGCTCTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-'58-58,'58-57,59-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(3.5=13.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTCGTGAAGATCGCAGCA
R:
AACAGCCAGTCCAGCAAAACA
Band lengths:
251-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]