RnoEX0045438 @ rn6
Exon Skipping
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5705692-5706597:+
Coord C1 exon
chr20:5705692-5705884
Coord A exon
chr20:5705973-5706098
Coord C2 exon
chr20:5706425-5706597
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACGCCACGCTGTGTCCTTAGGCA
3' ss Score
8.26
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
ATTGTGCGGCAAGACCGAAGCATGGAGCAGATCGTGTTCCCGGTACCTGCCATCTGCCAGTTCCTGACAGAGGAGACCAAGCACCGGCTCTTCACCACCACGGAGCAGGACGAGCAGGGCAGCAAAGTGAGCGACTTCTTCGACCAGTCCTCCTTCCTGCACAACGAGATGGAGTGGCAGCGCCGGCTTCGCA
Seq A exon
GCATGCCGCTCATCTACTGGTTCTCCCGCCGCATGACGCTGTGGGGTAGCATCTCCTTCAACCTGGCAGTGTTCATCAACATCATCATTGCCTTCTTCTACCCCTACGTGGAAGGCGCGTCCACGG
Seq C2 exon
GCGTGCTGGGCTCCCCACTCATCTCGCTCCTCTTCTGGATCCTCATCTGCTTCTCCATTGCCGCGCTGTTCACCAAGCACTACAGCGTCCGTCCCCTCATTGTGGCACTGGTCCTTCGCTCCATCTACTACCTGGGCATTGGGCCCACGCTCAACATCCTGGGTGCTCTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795-'58-68,'58-67,59-68
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.4=1.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAAAGTGAGCGACTTCT
R:
TGAGAGCACCCAGGATGTTGA
Band lengths:
246-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]