GgaEX6027040 @ galGal4
Exon Skipping
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4566340-4568178:-
Coord C1 exon
chr26:4567986-4568178
Coord A exon
chr26:4567007-4567132
Coord C2 exon
chr26:4566340-4566512
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTCCTCTCCCCGCAGGCA
3' ss Score
14.32
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATTGTGCGCCTGGACCGCAGCATGGAGCAGATAATCTTCCCAGTGCCTGGCATCTGCGAGTTCCTCACCAAGGAGACCAAGTACCGACTCTTCACCACGACGGAGCAGGATGAGCAGGGCAGCAAAGTCAGTGATTTCTTCGACCAGTCGTCCTTCCTCCACAACGAGATGGAGTGGCAGAAGAAACTGCGCA
Seq A exon
GCATGCCGCTGATGTACTGGTTCTCCCGCAGAATGACTCTCTGGGGAAGCATTTCCTTCAACCTGGCTGTCTTCATCAACATAATCATTGCTTTCTTCTACCCTTATGTTGAGGCCACTTCCATGG
Seq C2 exon
GAGTGCTGGATTCCCCATTGATCTCACTGCTCTTCTGGATTCTGATCTGCTTCTCCATCATGGCCCTGTTCACCAAGCGGTACGGTGTCAGACCACTGCTGGTGGCCCTGATCTTGAGATCAATTTATTACTTGGGGATTGGACTCACACTGAACATCCTGGGAGCTCTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'54-59,'54-57,55-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.4=1.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCAGCAAAGTCAGTGAT
R:
GCTCCCAGGATGTTCAGTGTG
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]