Special

BtaEX6096999 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7729983-7731119:+
Coord C1 exon
chr23:7729983-7730234
Coord A exon
chr23:7730324-7730468
Coord C2 exon
chr23:7730999-7731119
Length
145 bp
Sequences
Splice sites
3' ss Seq
GCCACCTCCACCTCTTCCAGCTA
3' ss Score
7.33
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GTACCAGCTGAAGCTCTTCGCCCGCATGTGCCTGGACCGGCAGTACCTGGCCATCGACGAGATCTCCCAGCAGCTGGGCGTCGACCTCATCTTCCTGTGCATGGCGGACGAGATGCTGCCCTTTGACCTGCGCGCCTCCTTCTGCCACCTGATGCTCCACGTGCACGTGGACCGCGACCCCCAGGAGCTGGTCACACCCGTCAAGTTCGCCCGCCTCTGGACCGAGATCCCCACGGCCATCACCATCAAGGA
Seq A exon
CTACGATTCCAACCTCAACGCCTCCCGAGACGACAAGAAGAACAAGTTCGCCAGCACCATGGAGTTCGTGGAGGACTACCTCAACAATGTGGTCAGCGAGGCCGTGCCCTTCGCCAACGAGGAGAAGAACAAACTCACCTTTGAG
Seq C2 exon
GTGGTCAGCCTGGCGCACAACCTCATCTACTTTGGCTTCTACAGCTTCAGCGAGCTGCTGCGGCTCACGCGCACTCTGCTGGGCATCATCGACTGCGTGCAGGCCTACGAGGACCCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTGGCCATCGACGAGAT
R:
AAGTAGATGAGGTTGTGCGCC
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]