Special

GgaEX6027025 @ galGal4

Exon Skipping

Gene
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4579104-4579966:-
Coord C1 exon
chr26:4579715-4579966
Coord A exon
chr26:4579416-4579560
Coord C2 exon
chr26:4579104-4579251
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTGCTGTCTCCCCACGCAGCTA
3' ss Score
9.23
5' ss Seq
GAGGTGCGA
5' ss Score
5.51
Exon sequences
Seq C1 exon
GTACCAGCTGAAGCTCTTTGCCCGCATGTGTCTGGACCGCCAATACTTGGCCATCAAGGAGATCTCCCAGCAGCTGGGCGTGGACCTGATCTTCCTCTGCATGGCGGATGAAATGCTGCCCTTCGATCTCCGAGCGTCCTTCTGCCACCTCATGCTACACGTGCACGTGGACAGGGACCCTCAGGAGCTGGTGATGCCCGTGAAGTTTGCACGGCTCTGGACTGAGATCCCCACCGCCATCACTATCAAAGA
Seq A exon
CTACGACTCCAACCTCAACGCCTCGCGTGACGACAAGAAAAACAAGTTTGCCAGCACCATGGAGTTTGTGGAGGACTACCTCAACAACGTGGTGAGCGAAGCGGTGCCCTTTGCCAACGAGGAGAAGAACAAGCTCACCTTCGAG
Seq C2 exon
GTCGTCAGCCTTGCCCACAACCTCATCTACTTTGGCTTCTACAGCTTCAGTGAGCTGCTGCGCCTGACACGCACACTGCTGGGCATCATCGACTGCGTCCAAAACCCCCAGCTGATGATGCAGGCGGTCTACAGTGATGAGGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'18-23,'18-22,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTGCCACCTCATGCTA
R:
GTAGACCGCCTGCATCATCAG
Band lengths:
248-393
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]