RnoEX6061820 @ rn6
Exon Skipping
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5686627-5687733:+
Coord C1 exon
chr20:5686627-5686878
Coord A exon
chr20:5686968-5687112
Coord C2 exon
chr20:5687592-5687733
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCTCCTGCTTCCATCCTTAGCTA
3' ss Score
8.65
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GTACCAGTTGAAGCTGTTTGCCCGCATGTGCCTAGACCGCCAGTACCTGGCCATCGACGAGATCTCCAAGCAACTGGGTGTGGAGCTGCTTTTCCTATGCATGGCGGACGAGATGCTGCCCTTTGACCTCCGCGCCTCATTCTGCCACCTGATGCTACATGTGCACGTGGACCGTGACCCCCAGGAGCTGGTGACCCCTGTCAAGTTTGCCCGCCTCTGGACAGAGATCCCCACGGCCATCACCATCAAAGA
Seq A exon
CTATGATTCCAATCTCAACGCCTCCCGAGATGACAAGAAAAACAAGTTTGCCAGCACCATGGAGTTCGTGGAGGATTACCTTAACAACGTGGTCGGCGAGGCCGTGCCCTTTGCCAACGATGAGAAGAACATACTGACCTTTGAG
Seq C2 exon
GTGGTCAGCCTGGCACACAACCTCATCTACTTCGGGTTCTACAGCTTCAGCGAGCTGCTGCGACTCACACGCACGTTGCTGGGCATCATCGACTGCATTCAGGCACCAGCCGCTGTGCTGCAGGCCTATGAGGAGCCTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795-'23-22,'23-21,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCTGCCCTTTGACCTC
R:
GTGCCTGAATGCAGTCGATGA
Band lengths:
249-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]