HsaEX6046703 @ hg19
Exon Skipping
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:6182]
Coordinates
chr6:33638102-33639083:+
Coord C1 exon
chr6:33638102-33638353
Coord A exon
chr6:33638448-33638592
Coord C2 exon
chr6:33638942-33639083
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTCATGGCCTCCACCCTCAGCTA
3' ss Score
5.83
5' ss Seq
GAGGTGGCT
5' ss Score
1.4
Exon sequences
Seq C1 exon
GTACCAGCTGAAGCTCTTTGCCCGCATGTGCTTGGACCGCCAGTACTTGGCCATCGACGAGATCTCCCAGCAGCTGGGCGTGGACCTGATTTTCCTGTGCATGGCAGACGAGATGCTGCCCTTTGACCTGCGCGCCTCCTTCTGCCACCTGATGCTGCACGTGCACGTGGACCGTGACCCCCAGGAGCTGGTCACGCCGGTCAAGTTTGCCCGTCTCTGGACTGAGATCCCCACAGCCATCACCATCAAGGA
Seq A exon
CTATGATTCCAACCTCAACGCGTCCCGAGATGACAAGAAGAACAAGTTTGCCAACACCATGGAGTTCGTGGAGGACTACCTCAACAATGTAGTCAGCGAGGCCGTGCCCTTTGCCAACGAGGAGAAGAACAAGCTCACTTTTGAG
Seq C2 exon
GTGGTCAGCCTGGCGCACAATCTCATCTACTTCGGCTTCTACAGCTTCAGCGAGCTGCTGCGGCTCACTCGCACACTGCTGGGCATCATCGACTGTGTGCAGGGGCCCCCGGCCATGCTGCAGGCCTATGAGGACCCCGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433-'24-24,'24-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCTGCCCTTTGACCTG
R:
CACACAGTCGATGATGCCCAG
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)