Special

GgaEX6027025 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr26:4458875-4459756:-
Coord C1 exon
chr26:4459505-4459756
Coord A exon
chr26:4459206-4459350
Coord C2 exon
chr26:4458875-4459041
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTGCTGTCTCCCCACGCAGCTA
3' ss Score
9.23
5' ss Seq
GAGGTGCGA
5' ss Score
5.51
Exon sequences
Seq C1 exon
GTACCAGCTGAAGCTCTTTGCCCGCATGTGTCTGGACCGCCAATACTTGGCCATCAAGGAGATCTCCCAGCAGCTGGGCGTGGACCTGATCTTCCTCTGCATGGCGGATGAAATGCTGCCCTTCGATCTCCGAGCGTCCTTCTGCCACCTCATGCTACACGTGCACGTGGACAGGGACCCTCAGGAGCTGGTGATGCCCGTGAAGTTTGCACGGCTCTGGACTGAGATCCCCACCGCCATCACTATCAAAGA
Seq A exon
CTACGACTCCAACCTCAACGCCTCGCGTGACGACAAGAAAAACAAGTTTGCCAGCACCATGGAGTTTGTGGAGGACTACCTCAACAACGTGGTGAGCGAAGCGGTGCCCTTTGCCAACGAGGAGAAGAACAAGCTCACCTTCGAG
Seq C2 exon
GTCGTCAGCCTTGCCCACAACCTCATCTACTTTGGCTTCTACAGCTTCAGTGAGCTGCTGCGCCTGACACGCACACTGCTGGGCATCATCGACTGCGTCCAAAACCCCCAGCTGATGATGCAGGCGGTCTACAGTGATGAGGTGACAGGTGAGTCCCTGCTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTGCCACCTCATGCTA
R:
GTAGACCGCCTGCATCATCAG
Band lengths:
248-393
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]