DreEX6049575 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21273604-21276280:+
Coord C1 exon
chr8:21273604-21273855
Coord A exon
chr8:21275849-21275993
Coord C2 exon
chr8:21276136-21276280
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTGCTGTTTTATGTTATAGTTA
3' ss Score
8.3
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTACCAGCTGAAGCTGTTCGCACGAATGTGTTTTGATCGGCAGTATCTGGCCATAGATGTGATCTCAAAGCAGCTGGATATAGAGCTAATCTCGCTCTGCATGATGGACGAGACTCTTCCCTTTGACCTGCGAGCGTCTTTCTGTAGGCTCATGCTGCACGCACACGTTGATCGTGACCCTCAGGAGCTTGTGACGCCCATCAAGTTTGCCCGCTTGTGGACTGAGATTCCCACCTCTATCAGCATCAAAGA
Seq A exon
TTATGACTCTCACTTGGACTATTCACGAGACAATAAAAAGAACAAGTTTGCTAATACCATGGCTTTCATGGAGGAATACCTCAACAATGTGCTCATCGATGACCTGCCTTTTGCAAACGAGGAGAAAAACAAGCTAACGTATGAG
Seq C2 exon
GTGGTGAGCTTGGCGAGGCATCTCATCTACTTTGGCTTCTACAGCTTTTTCGAGCTCCTGAGATTGACTCGCACTCTTCTGGGAATCATAGACTGCACTCCGAGCAACGCTTCCATCAACCCACTGTTCAACGATGATGGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-'22-26,'22-25,23-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGAGCGTCTTTCTGTAGG
R:
AGTGGGTTGATGGAAGCGTTG
Band lengths:
250-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]