Special

BtaEX6097013 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7718959-7720294:+
Coord C1 exon
chr23:7718959-7719117
Coord A exon
chr23:7719303-7719401
Coord C2 exon
chr23:7720211-7720294
Length
99 bp
Sequences
Splice sites
3' ss Seq
GGCTCCGTCGGTCCCCGTAGGTG
3' ss Score
8.8
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTCTTGCACATGAAGAGTAACAAGTACCTGACCGTCAACAAGCGGCTGCCAGCCCTGCTGGAGAAGAATGCCATGAGGGTGACGCTGGACGCCACGGGCAATGAGGGCTCCTGGCTCTTCATCCAGCCCTTCTGGAAGCTGCGGAGCAACGGGGACAAC
Seq A exon
GTGGTTGTGGGGGACAAGGTGATCCTGAATCCCGTCAACGCCGGGCAGCCTCTGCACGCCAGCAATTACGAGCTCAGCGACAACGCCGGCTGCAAGGAG
Seq C2 exon
GTCAACTCTGTGAACTGCAACACCAGCTGGAAGATCAACCTGTTCATGCAGTTCCGAGACCACCTGGAGGAGGTGCTGAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):

C1:
PF087096=Ins145_P3_rec=FE(22.8=100)
A:
PF087096=Ins145_P3_rec=FE(14.0=100)
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTGACCGTCAACAAGCG
R:
ATCTTCCAGCTGGTGTTGCAG
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]