Special

HsaEX0032599 @ hg38

Exon Skipping

Gene
Description
inositol 1,4,5-trisphosphate receptor type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr6:33658670-33659549:+
Coord C1 exon
chr6:33658670-33658828
Coord A exon
chr6:33659021-33659119
Coord C2 exon
chr6:33659466-33659549
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTCCCACCTGTCTGCTCAGGTG
3' ss Score
8.82
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CTCCTGCACATGAAGAGCAACAAGTACCTGACAGTGAACAAGCGGCTTCCGGCCTTGCTGGAGAAGAACGCCATGCGGGTGACTCTGGATGCCACAGGCAACGAGGGTTCCTGGCTCTTCATCCAGCCCTTCTGGAAGCTGCGGAGCAACGGGGACAAC
Seq A exon
GTGGTCGTGGGGGACAAGGTGATCCTGAATCCTGTCAATGCCGGGCAGCCTCTGCATGCCAGCAATTACGAGCTCAGCGACAACGCCGGCTGCAAGGAG
Seq C2 exon
GTCAATTCTGTGAACTGCAACACCAGCTGGAAGATCAACCTGTTTATGCAGTTTCGGGACCACCTGGAGGAGGTGTTGAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):

C1:
PF087096=Ins145_P3_rec=FE(22.8=100)
A:
PF087096=Ins145_P3_rec=FE(14.0=100)
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTGGAGAAGAACGCCAT
R:
GGTGGTCCCGAAACTGCATAA
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development