RnoEX0045439 @ rn6
Exon Skipping
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5675229-5675988:+
Coord C1 exon
chr20:5675229-5675387
Coord A exon
chr20:5675545-5675643
Coord C2 exon
chr20:5675905-5675988
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACCCTGGCTGTCCCCTGAAGGTG
3' ss Score
7.27
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTTCTGCACATGAAGAGCAACAAATACTTAACGGTGAACAAGCGGCTGCCGGCCCTGCTGGAGAAGAACGCCATGCGGGTGACGCTGGACGCGACAGGCAACGAGGGCTCCTGGCTCTTCATCCAGCCCTTCTGGAAGCTTCGGAGCAATGGGGATAAC
Seq A exon
GTGGTTGTGGGGGACAAGGTGATCCTGAACCCTGTCAACGCAGGGCAGCCTCTACACGCCAGCAACTATGAGCTTAGTGATAACGTTGGCTGCAAGGAG
Seq C2 exon
GTCAACTCTGTCAACTGCAACACCAGCTGGAAGATCAACTTATTCATGCAGTTCCGGGACCATCTGGAGGAGGTGTTGAAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795-'6-6,'6-4,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(22.8=100)
A:
PF087096=Ins145_P3_rec=FE(14.0=100)
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGAGAAGAACGCCATG
R:
AACACCTCCTCCAGATGGTCC
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]