GgaEX1030911 @ galGal3
Exon Skipping
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4465930-4466515:-
Coord C1 exon
chr26:4466357-4466515
Coord A exon
chr26:4466134-4466232
Coord C2 exon
chr26:4465930-4466013
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTTCCCATTTTGCTCCCCAGGTA
3' ss Score
9.93
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
CTCCTGCACATGAAGAGCAACAAATACCTGACGGTGAACAAGCGGCTGCCGGCCCTGCTGGAGAAGAACGCCATGCGTGTGACGCTGGATGCCACCGGCAATGAGGGCTCCTGGCTCTTCATCCAACCCTTCTGGAAGCTGAGGAGCAACGGAGATAAT
Seq A exon
GTAGTTGTGGGAGACAAAGTCATCCTGAACCCCGTGAATGCCGGGCAGCCGCTGCACGCCAGCAACTATGAGCTCGCTGATAACGCAGGCTGCAAGGAG
Seq C2 exon
GTGAACTCGGTCAATTGTAACACCAGCTGGAAAATCAACCTCTTCATGCAGTTCCGTGACCACATGGAGGAAGTGCTGAAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(22.8=100)
A:
PF087096=Ins145_P3_rec=FE(14.0=100)
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGAGAAGAACGCCATG
R:
CAGCACTTCCTCCATGTGGTC
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]