Special

MmuEX6076265 @ mm9

Exon Skipping

Gene
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27223784-27224619:+
Coord C1 exon
chr17:27223784-27223942
Coord A exon
chr17:27224091-27224189
Coord C2 exon
chr17:27224536-27224619
Length
99 bp
Sequences
Splice sites
3' ss Seq
GGCCCGTCTGTCCCCCAAAGGTG
3' ss Score
7.74
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTTCTGCATATGAAGAGCAACAAATACTTAACTGTGAACAAGCGGCTGCCAGCCCTGCTGGAGAAGAATGCCATGCGGGTGACGCTGGATGCTACGGGCAATGAGGGCTCCTGGCTCTTCATCCAGCCCTTCTGGAAGCTTCGGAGCAATGGGGATAAT
Seq A exon
GTGGTCGTGGGGGACAAGGTGATCCTGAATCCTGTCAATGCCGGGCAGCCCTTACATGCCAGCAACTATGAGCTTAGTGATAATGCTGGCTGCAAAGAG
Seq C2 exon
GTCAACTCTGTCAACTGCAACACCAGCTGGAAGATCAACTTATTCATGCAGTTCCGGGACCACCTGGAGGAGGTGCTGAAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-'5-6,'5-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):

C1:
PF087096=Ins145_P3_rec=FE(22.8=100)
A:
PF087096=Ins145_P3_rec=FE(14.0=100)
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACTGTGAACAAGCGGCTGC
R:
GATCTTCCAGCTGGTGTTGCA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]