DreEX6049585 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21257643-21262277:+
Coord C1 exon
chr8:21257643-21257801
Coord A exon
chr8:21259722-21259820
Coord C2 exon
chr8:21262194-21262277
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGGTTTGTAATCCATTGCAGGTG
3' ss Score
9.55
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
Exon sequences
Seq C1 exon
CTGCTCCACATGAAGAGTAACAAGTATTTGACAGTAAATAAGCGTCTCCCAGCACTACTGGAGAAGAATGCAATGCGCGTCACTCTGGATGGGACGGGGAATGAGGGCTCCTGGCTTTTCATTCAGCCTTTCTGGAAGCTCAGAGCCAACGGAGACAAT
Seq A exon
GTGGTGGTTGGAGACAAAGTGATCCTGAATCCTGTGAATGCTGGACAGCCTCTCCATGCCAGCAGCTATGAGCTTCCCGATCATTCAGGGTGCAAAGAG
Seq C2 exon
ATCAACTCTGTGAACAGCAACACCAGCTGGAAGATCAGTCTGTTTATGATGTTCAGTGACCACAAAGATGAAGTGCTGAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-'6-11,'6-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PD(43.3=92.1)
A:
PF087096=Ins145_P3_rec=FE(14.0=100)
C2:
PF087096=Ins145_P3_rec=PD(19.2=71.4),PF0281514=MIR=PU(2.1=14.3)
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAATAAGCGTCTCCCAGCACT
R:
ACAGACTGATCTTCCAGCTGGT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]