BtaEX6097369 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12646189-12648072:+
Coord C1 exon
chr23:12646189-12646385
Coord A exon
chr23:12646926-12647052
Coord C2 exon
chr23:12647837-12648072
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGATTCTTTCCTTGCTACAGGAG
3' ss Score
8.73
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GATCCTTTGAAGAAATGATTCCCGCACGGAAGCTGAAGAATTTTTACCCGGGAGTGGCAGAACACAAGGATATTTCCAAGCTGGTCCTCCTCCTTTCTTCCTCCGTGAACTCTCTGAGAAAGGCAGTTCATGAAGCCCTGCAGGACTTTCAAAAGTACAAGACACTCTGGACAGAGGACCGAGATGTGAAAGTGAAG
Seq A exon
GAGTTTTTGGCTAACAATCCCTCTCTGACTGAAATCAGATCTGAAATTCTACACTATGCGACTTTTGAACAGGAAATCGATGAGTTGAAGCCTATTATAGTTGTAGGAGCACTTGAATTGCATACAG
Seq C2 exon
AGCCAATGAAATTGGCCTTATCAATTGAGGCTAAGGCATGGAAGATGCTACTCTGTCGATATTTGAATGAAGAATACAAAAAGAAGATGTCAGACATGATAGCATTTATCAACGAATACTTGAAAAAGTTATCTAGACCTATCCGTGACTTAGATGATGTCAGATTTGCCATGGAAGCCTTGTCTTGTATCCGTGACAATGAAATTCAAATGGACATGACTTTGGGACCAATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'38-39,'38-38,39-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAAGCCCTGCAGGACTTT
R:
CAAGACAAGGCTTCCATGGCA
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]