MmuEX0015092 @ mm10
Exon Skipping
Gene
ENSMUSG00000033826 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30704655-30712386:+
Coord C1 exon
chr17:30704655-30704851
Coord A exon
chr17:30706385-30706511
Coord C2 exon
chr17:30712273-30712386
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACTGCTGTGTTACCTGGCAGGAG
3' ss Score
7.6
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGTCTTTTGAAGAAACCATCCCAGCCAGGAAGCTGAAGAACTTCTATCCTGGCGTGGCAGAGCACAAGGATATCTCCAAGCTGGTGCTCCTCCTGTCCTCCTCTGTGAATTCTCTCCGGAAGGCGGCCACTGAGGCCCTGCAGGACTTTCAGAAGTACAAGACTCTCTGGATCGAAGACCGCCACGTGAAAGTCAAG
Seq A exon
GAGTTTTTGGCCAACAACCCTTCCCTGACTGAGATCCGATCAGAAATCCTCCACTATGCCACCCTTGAGCAAGAGATCAAGGAACTGAAGCCCATTATTGTTGTAGGATCCCTGGAACTGCACACAG
Seq C2 exon
GTTTCCGTACAAGGTGAACTTGTGAAAGTGCAGCCCAAATTTAAAAGCAACCTGCTCGAGTCGGTGAAGGTCTTCTGTGAGGACGTTATAAACTTTACAGAAGCCTATGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826_MULTIEX2-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTCTATCCTGGCGTGGC
R:
CCTCACAGAAGACCTTCACCG
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types