RnoEX6062084 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9385834-9389730:+
Coord C1 exon
chr20:9385834-9386030
Coord A exon
chr20:9387605-9387731
Coord C2 exon
chr20:9389495-9389730
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACTGTTGTGTTACCTTGCAGGAG
3' ss Score
10.63
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGTCGTTTGAAGAAAGCATCCCAGCCAGGAAGCTGAAGAACTTCTACCCTGGCGTGGCGGAGCACAAGGATATCTCCAAGCTGGTCCTCCTCCTGTCGTCCTCTGTGAATTCCCTCCGGAAGGCGGCCACTGAGGCCCTGCAGGACTTTCAGAAGTACAAGACTCTCTGGACGGAAGACAGAGATGTGAAAGTCAAG
Seq A exon
GAGTTTTTGGCCAACAACCCTTCCCTGACTGAGATCCGATCAGAAATTCTCCACTATGCAACCTTTGAGCAGGAGATCGAGGAACTGAAGCCCATTATTGATGTAGGAGCCTTGGAGCTGCACACAG
Seq C2 exon
AGCCAATGAAGTTAGCCTTGTCCATCGAGGCCAAGGCGTGGAAGATGTTGCTCTGCCGCTACCTAAATGAGGAATATAAGAAGAAAATGTCAGACATGATAGTGTTTATCAACGAATACTTGAAAAAGTTATCCAGACCCATCCGGGACTTAGACGATGTCAGGTTCGCCATGGAGGCTTTGTCCTGTATCCGAGATAATGAAATTCAAATGGACATGACCTTGGGGCCCATAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'52-56,'52-55,53-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCATCCCAGCCAGGAAG
R:
GTAGCGGCAGAGCAACATCTT
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]