GgaEX6029615 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30691550-30694243:-
Coord C1 exon
chr3:30694050-30694243
Coord A exon
chr3:30692304-30692430
Coord C2 exon
chr3:30691550-30691785
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCCCTTCACCTAGCAA
3' ss Score
7.39
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AAAGAGCTGAAGATGGGATGAAAAGAAAGCTAAGAAATTTTTACTCAGGTGTTGCTGAAAGTGAAGATGTTTCTAAATTAGTTGTGCTCCTCTCTTCTTCTATGAATTCTATAAGAGAAATAGCTAGTGAAGCTCTGCAGGATTTTCAGAAATATAAAGTGCTTTGGACAGAAGATAGAGATGCCAAAATTCAG
Seq A exon
CAATTTTTGGCTGGTTCTCCATCTCTGACTGAAATTAGAGAAGAAATACTTCACTATGCTATGTTTGAGCAAGAGATGAAAGATCTGAAACCCACTCTTCTTCTTGGTCCAATTGAATTGCACACAG
Seq C2 exon
GACCACTGAAAACAGCTTTATCAGCTGAAGCCAAAGCCTGGAAGTTACTCCTTTGTCGTTATTTAAATGAGGAATATAAAAAGAAAATGACAGACATGACATCATTCATAACCACATATTTAAAGAAATTGTCTCGACCTCTGAATGACCTAGATGATGTCAGGCTTGCAATGGAAGCTTTATCTGTCATACGTGATAATAAAATAGAAATGGATATGACTCTGGGACCTATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'26-29,'26-28,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAAGCTCTGCAGGATTTTCA
R:
AAGCTTCCATTGCAAGCCTGA
Band lengths:
249-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]