HsaEX6047061 @ hg19
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:2952]
Coordinates
chr6:38790614-38794167:+
Coord C1 exon
chr6:38790614-38790810
Coord A exon
chr6:38791338-38791464
Coord C2 exon
chr6:38793932-38794167
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGACTATTTTCTTACCACAGGAA
3' ss Score
9.13
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GATCTTTTGAAGAAGCTATTCCTGCGAGGAAGCTGAAGAATTTTTACCCGGGGGTAGCGGAGCACAAGGATATTTCTAAGTTGGTCCTGCTCCTTTCTTCCTCTGTAAATTCCCTAAGAAAGGCAGCTCATGAGGCCCTGCAGGACTTTCAGAAGTACAAGACTCTCTGGACAGAGGACCGCGATGTGAAAGTGAAG
Seq A exon
GAATTTTTGGCTAACAACCCCTCTCTGACTGAAATCAGATCAGAAATTCTACACTATGCTACTTTTGAACAGGAGATTGATGAGTTGAAGCCTATTATTGTTGTAGGAGCACTTGAATTACATACAG
Seq C2 exon
AGCCGATGAAATTGGCCTTATCCATCGAGGCCAAGGCATGGAAGATGTTACTCTGTCGATATCTGAATGAAGAATACAAAAAGAAAATGTCATACATGATAGCATTTATTAATGAATACTTGAAAAAGTTATCTAGACCTATTCGTGATTTAGATGATGTCAGATTTGCAATGGAAGCCTTGTCTTGCATACGTGATAATGAAATTCAAATGGACATGACTTTGGGACCAATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721-'28-31,'28-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGCAGGACTTTCAGAAG
R:
GCAAGACAAGGCTTCCATTGC
Band lengths:
251-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)