GgaEX6029615 @ galGal4
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr3:28821852-28824545:-
Coord C1 exon
chr3:28824352-28824545
Coord A exon
chr3:28822606-28822732
Coord C2 exon
chr3:28821852-28822087
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCCCTTCACCTAGCAA
3' ss Score
7.39
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AAAGAGCTGAAGATGGGATGAAAAGAAAGCTAAGAAATTTTTACTCAGGTGTTGCTGAAAGTGAAGATGTTTCTAAATTAGTTGTGCTCCTCTCTTCTTCTATGAATTCTATAAGAGAAATAGCTAGTGAAGCTCTGCAGGATTTTCAGAAATATAAAGTGCTTTGGACAGAAGATAGAGATGCCAAAATTCAG
Seq A exon
CAATTTTTGGCTGGTTCTCCATCTCTGACTGAAATTAGAGAAGAAATACTTCACTATGCTATGTTTGAGCAAGAGATGAAAGATCTGAAACCCACTCTTCTTCTTGGTCCAATTGAATTGCACACAG
Seq C2 exon
GACCACTGAAAACAGCTTTATCAGCTGAAGCCAAAGCCTGGAAGTTACTCCTTTGTCGTTATTTAAATGAGGAATATAAAAAGAAAATGACAGACATGACATCATTCATAACCACATATTTAAAGAAATTGTCTCGACCTCTGAATGACCTAGATGATGTCAGGCTTGCAATGGAAGCTTTATCTGTCATACGTGATAATAAAATAGAAATGGATATGACTCTGGGACCTATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAAGCTCTGCAGGATTTTCA
R:
AAGCTTCCATTGCAAGCCTGA
Band lengths:
249-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]